[Home ] [Archive]   [ فارسی ]  
:: Main :: About :: Current Issue :: Archive :: Search :: Submit :: Contact ::
Main Menu
Home::
Journal Information::
Editorial Board::
Executive Members::
Instruction to Authors::
Peer Review::
Articles Archive::
Indexing Databases::
Contact Us::
Site Facilities::
::
Search in website

Advanced Search
Receive site information
Enter your Email in the following box to receive the site news and information.
:: Volume 18, Issue 3 (10-2016) ::
J Gorgan Univ Med Sci 2016, 18(3): 111-117 Back to browse issues page
Genomic structure of Burkholderia mallei Razi 325, the strain used for industrial production of Mallein in Iran
E Faraj Tabrizi1 , K Tadayon * 2, N Mosavari3 , Tajbakhsh E4 , Keshavarz R5 , Ghaderi R5 , Sekhavati M6 , Banihashemi R6 , Najafpour R7 , Mohrekesh Haghighat M8 , Dehghanpour M9
1- M.Sc in Microbiology, Shahrekord Branch, Islamic Azad University, Shahrekord, Iran. M.Sc in Microbiology, Razi Vaccine and Serum Research Institute (RVSRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
2- Associate Professor, Department of Microbiology, Razi Vaccine and Serum Research Institute (RVSRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran. , k.tadayon@rvsri.ac.ir
3- Associate Professor, Department of Microbiology, Razi Vaccine and Serum Research Institute (RVSRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
4- Associate Professor, Department of Microbiology, Shahrekord Branch, Islamic Azad University, Shahrekord, Iran.
5- Veterinarian, Razi Vaccine and Serum Research Institute (RVSRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
6- M.Sc in Vaccine and Serum, Razi Vaccine and Serum Research Institute (RVSRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
7- M.Sc in Microbiology, Shahrekord Branch, Islamic Azad University, Shahrekord, Iran.
8- M.Sc in Microbiology, Razi Vaccine and Serum Research Institute (RVSRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
9- B.Sc in Laboratory Sciences, Razi Vaccine and Serum Research Institute (RVSRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
Abstract:   (11303 Views)

Background and Objective: Iran remains a major stronghold for glanders in the Middle East. In Iran, the non-indigenous Burkholderia mallei Razi 325 strain is used in manufacturing of the mallein, required for malleination of animals. Multi Locus Variable number tandem repeat analysis is currently the standard globally accepted genotyping system for Burkholderia mallei. This study was done to survey the genomic structure of Burkholderia mallei Razi 325, the strain used for industrial production of Mallein.

Methods: In this descriptive study, a MLVA genotyping system with 4 previously-characterized loci VNTR140, VNTR1367, VNTR2065, VNTR2971 along with two new loci of VNTR24, VNTR41 was used.

Results: Optimization of PCRs resulted in a single protocol that enabled simultaneous amplification of all the six loci. Sequencing of PCR products revealed there were 2, 3, 12, 6, 1 and 2 copies of the unit repeat hold in the genome of the Burkholderia mallei Razi 325 strain. This observation was extended to include the already-whole genome sequenced Chinese Burkholderia mallei ATCC 23344 and Burkholderia mallei BMQ and also Burkholderia mallei SAVP1 strains.

Conclusion: The Burkholderia mallei Razi 325 strain is distinguishable from the other three strains through MLVA genotyping method.

Keywords: Glanders, Mallein, Burkholderia mallei Razi 325, MLVA genotyping, VNTR
Full-Text [PDF 255 kb] [English Abstract]   (16708 Downloads) |   |   Abstract (HTML)  (1800 Views)  
Type of Study: Original Articles | Subject: Microbiology
References
1. Howe C, Sampath A, Spotnitz M. The pseudomallei group: a review. J Infect Dis. 1971 Dec; 124(6):598-606.
2. Dvorak GD, Spickler AR. Glanders. J Am Vet Med Assoc. 2008 Aug; 233(4):570-7. doi: 10.2460/javma.233.4.570
3. Malik P, Singha H, Khurana SK, Kumar R, Kumar S, Raut AA, et al. Emergence and re-emergence of glanders in India: a description of outbreaks from 2006 to 2011. Vet Ital. 2012 Apr-Jun; 48(2):167-78.
4. Hornstra H, Pearson T, Georgia S, Liguori A, Dale J, Price E, et al. Molecular epidemiology of glanders, Pakistan. Emerg Infect Dis. 2009 Dec; 15(12):2036-9. doi: 10.3201/eid1512.090738
5. Parker L, Creek B. Bioterrorism and Intelligence. Global Security Studies. 2013; 4(3): 53-63.
6. Khaki P, Mosavari N, Khajeh NS, Emam E, Ahouran M, Hashemi S, et al. Glanders outbreak at Tehran Zoo, Iran. Iran J Microbiol. 2012; 4(1): 3-7.
7. Mota RA, da Fonseca Oliveira AA, da Silva AM, Junior JW, da Silva LB, de Farias Brito M, Rabelo SS. Glanders in donkeys (Equus Asinus) in the state of pernambuco, Brazil: A case report. Braz J Microbiol. 2010 Jan; 41(1):146-9. doi: 10.1590/S1517-838220100001000021
8. Théodoridès J. [A great Franco-Mauritian epidemiologist: Joseph Désiré Tholozan (1820-18970]. Bull Soc Pathol Exot. 1998; 91(1):104-8. [Article in French]
9. Compant S, Nowak J, Coenye T, Clément C, Ait Barka E. Diversity and occurrence of Burkholderia spp. in the natural environment. FEMS Microbiol Rev. 2008 Jul; 32(4):607-26. doi: 10.1111/j.1574-6976.2008.00113.x
10. Vial L, Groleau MC, Dekimpe V, Déziel E. Burkholderia diversity and versatility: an inventory of the extracellular products. J Microbiol Biotechnol. 2007 Sep; 17(9):1407-29.
11. Sprague LD, Zysk G, Hagen RM, Meyer H, Ellis J, Anuntagool N, Gauthier Y, Neubauer H. A possible pitfall in the identification of Burkholderia mallei using molecular identification systems based on the sequence of the flagellin fliC gene. FEMS Immunol Med Microbiol. 2002 Nov; 34(3):231-6.
12. U'Ren JM, Schupp JM, Pearson T, Hornstra H, Clark Friedman CL, Smith KL, et al. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. BMC Microbiol. 2007; 7:23. doi: 10.1186/ 1471-2180-7-23
13. Michelle Wong Su Yen, Lisanti O, Thibault F, Toh Su San, Loh Gek Kee, Hilaire V, et al. Validation of ten new polymorphic tandem repeat loci and application to the MLVA typing of Burkholderia pseudomallei isolates collected in Singapore from 1988 to 2004. J Microbiol Methods. 2009 Jun; 77(3):297-301. doi: 10.1016/j.mimet.2009.03.005
14. Wernery U, Wernery R, Joseph M, Al-Salloom F, Johnson B, Kinne J, et al. Natural Burkholderia mallei infection in Dromedary, Bahrain. Emerg Infect Dis. 2011 Jul; 17(7): 1277-79. doi: 10.3201/eid1707.110222
15. Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, et al. Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events. PLoS Negl Trop Dis. 2014 Sep; 8(9):e3195. doi: 10.1371/journal.pntd.0003195
16. Scholz HC, Joseph M, Tomaso H, Al Dahouk S, Witte A, Kinne J, et al. Detection of the reemerging agent Burkholderia mallei in a recent outbreak of glanders in the United Arab Emirates by a newly developed fliP-based polymerase chain reaction assay. Diagn Microbiol Infect Dis. 2006 Apr; 54(4):241-7.
17. Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, et al. Complete genome sequences for 59 Burkholderia isolates, both pathogenic and near neighbor. Genome Announc. 2015 Mar-Apr; 3(2): e00159-15. doi: 10.1128/genomeA. 00159-15
18. Winsor GL, Khaira B, Van Rossum T, Lo R, Whiteside MD, Brinkman FS. The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. Bioinformatics. 2008 Dec; 24(23):2803-4. doi: 10.1093/bioinformatics/btn524
19. Najafi Olya Z, Tadayon K, Ghaderi R. [A simplified van erth single nucleotide polymorphism (SNP) typing method of bacillus anthracis applicable by traditional thermocycler machines]. Medical Laboratory Journal. 2015; 9(1): 97-103. [Article in Persian]
20. Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG. Primer3--new capabilities and interfaces. Nucleic Acids Res. 2012 Aug; 40(15):e115.
21. Email author JY, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL. Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics. 2012; 13:134. doi: 10.1186/1471-2105-13-134
22. Sekhavati M, Tadayon K, Ghaderi R, Banihashemi R, Jabbari AR, Shokri Gh, et al. “In-house” production of DNA size marker from a vaccinal Bacillus anthracis strain. Iran J Microbiol. 2015; 7(1): 45-49.
23. Li W, Cowley A, Uludag M, Gur T, McWilliam H, Squizzato S, et al. The EMBL-EBI bioinformatics web and programmatic tools framework. Nucl Acids Res. 2015; gkv279. doi: 10.1093/nar/ gkv279
24. Stucky BJ. SeqTrace: a graphical tool for rapidly processing DNA sequencing chromatograms. J Biomol Tech. 2012 Sep; 23(3):90-3. doi: 10.7171/jbt.12-2303-004
Send email to the article author


XML   Persian Abstract   Print


Download citation:
BibTeX | RIS | EndNote | Medlars | ProCite | Reference Manager | RefWorks
Send citation to:

Faraj Tabrizi E, Tadayon K, Mosavari N, Tajbakhsh E, Keshavarz R, Ghaderi R, et al . Genomic structure of Burkholderia mallei Razi 325, the strain used for industrial production of Mallein in Iran. J Gorgan Univ Med Sci 2016; 18 (3) :111-117
URL: http://goums.ac.ir/journal/article-1-2844-en.html


Rights and permissions
Creative Commons License This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
Volume 18, Issue 3 (10-2016) Back to browse issues page
مجله دانشگاه علوم پزشکی گرگان Journal of Gorgan University of Medical Sciences
Persian site map - English site map - Created in 0.04 seconds with 35 queries by YEKTAWEB 4660
Creative Commons License
This work is licensed under a Creative Commons — Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)